IL_1DK1_003

3D structure

PDB id

1DK1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

1DK1|1|B|A|29

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1DK1_003 not in the Motif Atlas

Geometric match to IL_1G1X_003

Geometric discrepancy: 0.1849

The information below is about IL_1G1X_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1DK1|1|B|G|26
1DK1|1|B|A|27
1DK1|1|B|G|28
1DK1|1|B|A|29
1DK1|1|B|G|30
*
1DK1|1|B|U|39
1DK1|1|B|G|40
1DK1|1|B|G|41
1DK1|1|B|U|42

Current chains

Chain B

RRNA FRAGMENT

Nearby chains

Chain A

30S RIBOSOMAL PROTEIN S15