IL_1FKA_042

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUCG,CGAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FKA_042 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2302

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

1FKA|1|A|C|1050
1FKA|1|A|U|1051
1FKA|1|A|C|1052
1FKA|1|A|G|1053
*
1FKA|1|A|C|1084
1FKA|1|A|G|1085
1FKA|1|A|A|1086
1FKA|1|A|G|1087

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain C

30S RIBOSOMAL PROTEIN S3

Chain E

30S RIBOSOMAL PROTEIN S5