IL_1FKA_067

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

1FKA|1|A|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FKA_067 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1758

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

1FKA|1|A|G|646
1FKA|1|A|A|647
1FKA|1|A|G|648
1FKA|1|A|A|649
1FKA|1|A|G|650
*
1FKA|1|A|U|724
1FKA|1|A|G|725
1FKA|1|A|G|726
1FKA|1|A|U|727

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18