IL_1G70_031

3D structure

PDB id

1G70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1G70|5|A|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1G70_031 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3457

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1G70|5|A|G|46
1G70|5|A|G|47
1G70|5|A|G|48
1G70|5|A|C|49
*
1G70|5|A|G|70
1G70|5|A|G|71
1G70|5|A|U|72
1G70|5|A|A|73
1G70|5|A|C|74

Current chains

Chain A

HIV-1 RRE-IIB 32 NUCLEOTIDE RNA

Nearby chains

Chain B

RSG-1.2 PEPTIDE