IL_1HC8_003

3D structure

PDB id

1HC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

1HC8|1|D|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HC8_003 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2137

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

1HC8|1|D|G|309
1HC8|1|D|U|310
1HC8|1|D|A|311
1HC8|1|D|G|312
*
1HC8|1|D|C|326
1HC8|1|D|A|327
1HC8|1|D|U|328
1HC8|1|D|C|329

Current chains

Chain D

58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN

Nearby chains

Chain A

RIBOSOMAL PROTEIN L11

Chain B

RIBOSOMAL PROTEIN L11

Chain C

Large subunit ribosomal RNA; LSU rRNA