IL_1HNW_050

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1HNW|1|A|U|1257, 1HNW|1|A|A|1280, 1HNW|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNW_050 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.4882

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

1HNW|1|A|G|1255
1HNW|1|A|A|1256
1HNW|1|A|U|1257
1HNW|1|A|G|1258
*
1HNW|1|A|C|1277
1HNW|1|A|U|1278
1HNW|1|A|A|1279
1HNW|1|A|A|1280
1HNW|1|A|U|1281
1HNW|1|A|C|1282

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14