3D structure

PDB id
1HR0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
1HR0|1|A|U|244, 1HR0|1|A|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1HR0_011 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1088
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

1HR0|1|A|C|242
1HR0|1|A|A|243
1HR0|1|A|U|244
1HR0|1|A|C|245
1HR0|1|A|A|246
1HR0|1|A|G|247
*
1HR0|1|A|C|277
1HR0|1|A|G|278
1HR0|1|A|A|279
1HR0|1|A|C|280
1HR0|1|A|G|281
1HR0|1|A|A|282
1HR0|1|A|C|283
1HR0|1|A|G|284

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12
Chain Q
30S RIBOSOMAL PROTEIN S17

Coloring options:


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