IL_1I97_121

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

1I97|1|A|A|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I97_121 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1766

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

1I97|1|A|G|645
1I97|1|A|A|646
1I97|1|A|G|647
1I97|1|A|A|648
1I97|1|A|G|649
*
1I97|1|A|U|723
1I97|1|A|G|724
1I97|1|A|G|725
1I97|1|A|U|726

Current chains

Chain A

16S RRNA

Nearby chains

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18