IL_1J5A_008

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_008 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1561

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1J5A|1|A|G|215
1J5A|1|A|U|216
1J5A|1|A|U|217
1J5A|1|A|A|218
1J5A|1|A|G|219
1J5A|1|A|U|220
1J5A|1|A|A|221
1J5A|1|A|G|222
*
1J5A|1|A|C|230
1J5A|1|A|G|231
1J5A|1|A|A|232
1J5A|1|A|A|233
1J5A|1|A|C|234
1J5A|1|A|C|235
1J5A|1|A|C|236

Current chains

Chain A

23S RRNA

Nearby chains