IL_1J5A_009

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUUC*GACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_009 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3928

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

1J5A|1|A|G|291
1J5A|1|A|A|292
1J5A|1|A|U|293
1J5A|1|A|U|294
1J5A|1|A|C|295
*
1J5A|1|A|G|367
1J5A|1|A|A|368
1J5A|1|A|C|369
1J5A|1|A|U|370

Current chains

Chain A

23S RRNA

Nearby chains