IL_1J5A_010

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCUC*GAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_010 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.38

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1J5A|1|A|C|299
1J5A|1|A|C|300
1J5A|1|A|C|301
1J5A|1|A|U|302
1J5A|1|A|C|303
*
1J5A|1|A|G|359
1J5A|1|A|A|360
1J5A|1|A|G|361
1J5A|1|A|C|362
1J5A|1|A|G|363

Current chains

Chain A

23S RRNA

Nearby chains