IL_1J5A_017

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1J5A|1|A|G|814, 1J5A|1|A|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_017 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1742

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

1J5A|1|A|G|687
1J5A|1|A|A|688
1J5A|1|A|A|689
1J5A|1|A|A|690
1J5A|1|A|C|691
*
1J5A|1|A|G|812
1J5A|1|A|A|813
1J5A|1|A|G|814
1J5A|1|A|A|815
1J5A|1|A|U|816
1J5A|1|A|A|817
1J5A|1|A|G|818
1J5A|1|A|C|819

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4