IL_1J5A_034

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_034 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1595

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

1J5A|1|A|U|1015
1J5A|1|A|C|1016
1J5A|1|A|C|1017
1J5A|1|A|C|1018
1J5A|1|A|U|1019
1J5A|1|A|A|1020
1J5A|1|A|A|1021
1J5A|1|A|A|1022
*
1J5A|1|A|U|1161
1J5A|1|A|A|1162

Current chains

Chain A

23S RRNA

Nearby chains