IL_1J5A_051

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_051 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1201

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1J5A|1|A|C|1364
1J5A|1|A|U|1365
1J5A|1|A|A|1366
1J5A|1|A|A|1367
1J5A|1|A|G|1368
*
1J5A|1|A|C|1389
1J5A|1|A|G|1390
1J5A|1|A|A|1391
1J5A|1|A|U|1392
1J5A|1|A|G|1393

Current chains

Chain A

23S RRNA

Nearby chains