IL_1J5A_071

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1J5A|1|A|C|1792, 1J5A|1|A|C|1808, 1J5A|1|A|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_071 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.2077

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|U|1789
1J5A|1|A|G|1790
1J5A|1|A|C|1791
1J5A|1|A|C|1792
1J5A|1|A|A|1793
1J5A|1|A|A|1794
1J5A|1|A|C|1795
*
1J5A|1|A|G|1805
1J5A|1|A|G|1806
1J5A|1|A|A|1807
1J5A|1|A|C|1808
1J5A|1|A|G|1809
1J5A|1|A|U|1810
1J5A|1|A|A|1811
1J5A|1|A|U|1812
1J5A|1|A|A|1813

Current chains

Chain A

23S RRNA

Nearby chains