IL_1J5A_085

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACG*CGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GACG,CGUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_085 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2302

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1J5A|1|A|G|2279
1J5A|1|A|A|2280
1J5A|1|A|C|2281
1J5A|1|A|G|2282
*
1J5A|1|A|C|2292
1J5A|1|A|G|2293
1J5A|1|A|U|2294
1J5A|1|A|C|2295

Current chains

Chain A

23S RRNA

Nearby chains