IL_1J5A_101

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1J5A|1|A|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_101 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1661

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|U|2615
1J5A|1|A|U|2616
1J5A|1|A|G|2617
1J5A|1|A|A|2618
1J5A|1|A|G|2619
*
1J5A|1|A|C|2754
1J5A|1|A|A|2755
1J5A|1|A|A|2756
1J5A|1|A|G|2757
1J5A|1|A|A|2758
1J5A|1|A|U|2759
1J5A|1|A|G|2760
1J5A|1|A|A|2761
1J5A|1|A|G|2762

Current chains

Chain A

23S RRNA

Nearby chains