IL_1J5A_106

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1J5A|1|A|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_106 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1769

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1J5A|1|A|G|2717
1J5A|1|A|A|2718
1J5A|1|A|U|2719
1J5A|1|A|A|2720
1J5A|1|A|A|2721
1J5A|1|A|C|2722
*
1J5A|1|A|G|2742
1J5A|1|A|G|2743
1J5A|1|A|A|2744
1J5A|1|A|A|2745
1J5A|1|A|G|2746
1J5A|1|A|C|2747

Current chains

Chain A

23S RRNA

Nearby chains