IL_1J5A_111

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

1J5A|1|A|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_111 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1962

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1J5A|1|A|U|2822
1J5A|1|A|G|2823
1J5A|1|A|C|2824
1J5A|1|A|A|2825
1J5A|1|A|C|2826
1J5A|1|A|G|2827
*
1J5A|1|A|U|2840
1J5A|1|A|U|2841
1J5A|1|A|C|2842
1J5A|1|A|A|2843
1J5A|1|A|G|2844

Current chains

Chain A

23S RRNA

Nearby chains