IL_1J5A_118

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

1J5A|1|A|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_118 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.2036

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

1J5A|1|A|G|1760
1J5A|1|A|G|1761
1J5A|1|A|C|1762
*
1J5A|1|A|G|1963
1J5A|1|A|A|1964
1J5A|1|A|U|1965
1J5A|1|A|C|1966

Current chains

Chain A

23S RRNA

Nearby chains