IL_1J5A_119

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

1J5A|1|A|G|1882, 1J5A|1|A|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_119 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.2306

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1J5A|1|A|U|1833
1J5A|1|A|G|1834
*
1J5A|1|A|U|1881
1J5A|1|A|G|1882
1J5A|1|A|A|1883
1J5A|1|A|A|1884

Current chains

Chain A

23S RRNA

Nearby chains