3D structure

PDB id
1J5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
1J5E|1|A|A|532, 1J5E|1|A|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1J5E_021 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1463
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

1J5E|1|A|G|515
1J5E|1|A|U|516
1J5E|1|A|G|517
1J5E|1|A|C|518
1J5E|1|A|C|519
1J5E|1|A|A|520
1J5E|1|A|G|521
*
1J5E|1|A|C|528
1J5E|1|A|G|529
1J5E|1|A|G|530
1J5E|1|A|U|531
1J5E|1|A|A|532
1J5E|1|A|A|533
1J5E|1|A|U|534
1J5E|1|A|A|535
1J5E|1|A|C|536

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S RIBOSOMAL PROTEIN S3
Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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