IL_1JJ2_018

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_018 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2097

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1JJ2|1|0|C|558
1JJ2|1|0|U|559
1JJ2|1|0|C|560
1JJ2|1|0|G|561
*
1JJ2|1|0|C|596
1JJ2|1|0|A|597
1JJ2|1|0|C|598
1JJ2|1|0|G|599

Current chains

Chain 0

23S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN L32E