IL_1JJ2_048
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GAUGGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_048 not in the Motif Atlas
- Homologous match to IL_4V9F_048
- Geometric discrepancy: 0.0218
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
1JJ2|1|0|G|1312
1JJ2|1|0|A|1313
1JJ2|1|0|U|1314
1JJ2|1|0|G|1315
1JJ2|1|0|G|1316
1JJ2|1|0|A|1317
1JJ2|1|0|A|1318
1JJ2|1|0|G|1319
*
1JJ2|1|0|U|1338
1JJ2|1|0|G|1339
1JJ2|1|0|G|1340
1JJ2|1|0|A|1341
1JJ2|1|0|C|1342
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain S
- RIBOSOMAL PROTEIN L24
- Chain X
- RIBOSOMAL PROTEIN L32E
Coloring options: