IL_1JZX_017

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1JZX|1|A|G|814, 1JZX|1|A|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_017 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1703

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1JZX|1|A|G|687
1JZX|1|A|A|688
1JZX|1|A|A|689
1JZX|1|A|A|690
1JZX|1|A|C|691
*
1JZX|1|A|G|812
1JZX|1|A|A|813
1JZX|1|A|G|814
1JZX|1|A|A|815
1JZX|1|A|U|816
1JZX|1|A|A|817
1JZX|1|A|G|818
1JZX|1|A|C|819

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4