IL_1JZX_080

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_080 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.1926

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

1JZX|1|A|C|2068
1JZX|1|A|U|2069
1JZX|1|A|G|2070
1JZX|1|A|G|2071
*
1JZX|1|A|C|2210
1JZX|1|A|U|2211
1JZX|1|A|U|2212
1JZX|1|A|G|2213

Current chains

Chain A

23S rRNA

Nearby chains