IL_1JZZ_048

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1JZZ|1|A|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_048 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1617

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

1JZZ|1|A|C|1221
1JZZ|1|A|G|1222
1JZZ|1|A|G|1223
1JZZ|1|A|A|1224
1JZZ|1|A|G|1225
1JZZ|1|A|A|1226
1JZZ|1|A|A|1227
1JZZ|1|A|G|1228
*
1JZZ|1|A|U|1247
1JZZ|1|A|G|1248
1JZZ|1|A|G|1249
1JZZ|1|A|A|1250
1JZZ|1|A|G|1251

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22