IL_1JZZ_103

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCGCUG*UAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_103 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3493

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1JZZ|1|A|C|2659
1JZZ|1|A|C|2660
1JZZ|1|A|G|2661
1JZZ|1|A|C|2662
1JZZ|1|A|U|2663
1JZZ|1|A|G|2664
*
1JZZ|1|A|U|2704
1JZZ|1|A|A|2705
1JZZ|1|A|U|2706
1JZZ|1|A|G|2707

Current chains

Chain A

23S rRNA

Nearby chains