IL_1K01_017
3D structure
- PDB id
- 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 1K01|1|A|G|814, 1K01|1|A|G|818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K01_017 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1667
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
1K01|1|A|G|687
1K01|1|A|A|688
1K01|1|A|A|689
1K01|1|A|A|690
1K01|1|A|C|691
*
1K01|1|A|G|812
1K01|1|A|A|813
1K01|1|A|G|814
1K01|1|A|A|815
1K01|1|A|U|816
1K01|1|A|A|817
1K01|1|A|G|818
1K01|1|A|C|819
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain K
- Ribosomal Protein L4
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