IL_1K01_048
3D structure
- PDB id
- 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGAGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 1K01|1|A|A|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K01_048 not in the Motif Atlas
- Homologous match to IL_7A0S_043
- Geometric discrepancy: 0.1587
- The information below is about IL_7A0S_043
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
1K01|1|A|C|1221
1K01|1|A|G|1222
1K01|1|A|G|1223
1K01|1|A|A|1224
1K01|1|A|G|1225
1K01|1|A|A|1226
1K01|1|A|A|1227
1K01|1|A|G|1228
*
1K01|1|A|U|1247
1K01|1|A|G|1248
1K01|1|A|G|1249
1K01|1|A|A|1250
1K01|1|A|G|1251
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- Ribosomal Protein L22
Coloring options: