IL_1KQS_048

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

1KQS|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_048 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0347

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1KQS|1|0|G|1312
1KQS|1|0|A|1313
1KQS|1|0|U|1314
1KQS|1|0|G|1315
1KQS|1|0|G|1316
1KQS|1|0|A|1317
1KQS|1|0|A|1318
1KQS|1|0|G|1319
*
1KQS|1|0|U|1338
1KQS|1|0|G|1339
1KQS|1|0|G|1340
1KQS|1|0|A|1341
1KQS|1|0|C|1342

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain X

RIBOSOMAL PROTEIN L32E