IL_1KQS_089

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1KQS|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_089 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.257

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|C|2672
1KQS|1|0|U|2673
1KQS|1|0|G|2674
1KQS|1|0|A|2675
1KQS|1|0|C|2676
*
1KQS|1|0|G|2809
1KQS|1|0|G|2810
1KQS|1|0|A|2811
1KQS|1|0|A|2812
1KQS|1|0|A|2813
1KQS|1|0|A|2814
1KQS|1|0|G|2815
1KQS|1|0|A|2816
1KQS|1|0|G|2817

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain I

RIBOSOMAL PROTEIN L13