IL_1M5K_002

3D structure

PDB id

1M5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

C(IU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M5K_002 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.131

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

1M5K|1|A|C|16
1M5K|1|A|IU|17
1M5K|1|A|C|18
*
1M5K|1|B|G|4
1M5K|1|B|A|5
1M5K|1|B|G|6

Current chains

Chain A

RNA INHIBITOR SUBSTRATE

Chain B

RNA HAIRPIN RIBOZYME

Nearby chains