IL_1N33_023
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 1N33|1|A|A|532, 1N33|1|A|U|534, 1N33|1|A|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N33_023 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1482
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|G|515
1N33|1|A|U|516
1N33|1|A|G|517
1N33|1|A|C|518
1N33|1|A|C|519
1N33|1|A|A|520
1N33|1|A|G|521
*
1N33|1|A|C|528
1N33|1|A|G|529
1N33|1|A|G|530
1N33|1|A|U|531
1N33|1|A|A|532
1N33|1|A|A|533
1N33|1|A|U|534
1N33|1|A|A|535
1N33|1|A|C|536
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Y
- ANTICODON STEM-LOOP OF SER TRANSFER RNA
- Chain Z
- A-SITE MESSENGER RNA FRAGMENT
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