IL_1N34_050
3D structure
- PDB id
- 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CCCG*CGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CCCG,CGGG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N34_050 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2563
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
1N34|1|A|C|1161
1N34|1|A|C|1162
1N34|1|A|C|1163
1N34|1|A|G|1164
*
1N34|1|A|C|1172
1N34|1|A|G|1173
1N34|1|A|G|1174
1N34|1|A|G|1175
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- 30S RIBOSOMAL PROTEIN S2
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain I
- 30S RIBOSOMAL PROTEIN S9
Coloring options: