IL_1N34_058

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N34_058 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2442

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1N34|1|A|C|1404
1N34|1|A|G|1405
1N34|1|A|U|1406
1N34|1|A|C|1407
*
1N34|1|A|G|1494
1N34|1|A|U|1495
1N34|1|A|C|1496
1N34|1|A|G|1497

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Z

A-SITE MESSENGER RNA FRAGMENT