IL_1N8R_089
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAC*GGAAAAGAG
- Length
- 14 nucleotides
- Bulged bases
- 1N8R|1|A|G|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_089 not in the Motif Atlas
- Geometric match to IL_5J7L_345
- Geometric discrepancy: 0.2575
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
1N8R|1|A|C|2672
1N8R|1|A|U|2673
1N8R|1|A|G|2674
1N8R|1|A|A|2675
1N8R|1|A|C|2676
*
1N8R|1|A|G|2809
1N8R|1|A|G|2810
1N8R|1|A|A|2811
1N8R|1|A|A|2812
1N8R|1|A|A|2813
1N8R|1|A|A|2814
1N8R|1|A|G|2815
1N8R|1|A|A|2816
1N8R|1|A|G|2817
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L13P
Coloring options: