IL_1NBR_025

3D structure

PDB id

1NBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Iron Responsive Element RNA Hairpin, NMR, 15 Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NBR_025 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2366

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1NBR|11|A|A|3
1NBR|11|A|G|4
1NBR|11|A|U|5
*
1NBR|11|A|G|25
1NBR|11|A|C|26
1NBR|11|A|U|27

Current chains

Chain A

RNA HAIRPIN

Nearby chains