IL_1NBR_038

3D structure

PDB id

1NBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Iron Responsive Element RNA Hairpin, NMR, 15 Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NBR_038 not in the Motif Atlas

Geometric match to IL_1S03_008

Geometric discrepancy: 0.3127

The information below is about IL_1S03_008

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

1NBR|13|A|G|6
1NBR|13|A|C|7
1NBR|13|A|U|8
*
1NBR|13|A|A|23
1NBR|13|A|C|24

Current chains

Chain A

RNA HAIRPIN

Nearby chains