IL_1NJI_018

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJI_018 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2101

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1NJI|1|A|C|558
1NJI|1|A|U|559
1NJI|1|A|C|560
1NJI|1|A|G|561
*
1NJI|1|A|C|596
1NJI|1|A|A|597
1NJI|1|A|C|598
1NJI|1|A|G|599

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L32E