IL_1NJM_058

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

1NJM|1|0|U|1600, 1NJM|1|0|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_058 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4668

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1NJM|1|0|U|1426
1NJM|1|0|G|1427
1NJM|1|0|G|1428
1NJM|1|0|A|1429
1NJM|1|0|G|1430
*
1NJM|1|0|C|1598
1NJM|1|0|G|1599
1NJM|1|0|U|1600
1NJM|1|0|U|1601
1NJM|1|0|G|1602
1NJM|1|0|A|1603
1NJM|1|0|A|1604
1NJM|1|0|A|1605

Current chains

Chain 0

23S ribosomal RNA

Nearby chains