IL_1NJM_133

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCAAGU*AUGAAG

Length

12 nucleotides

Bulged bases

1NJM|1|0|G|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_133 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3887

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|U|1843
1NJM|1|0|C|1844
1NJM|1|0|A|1845
1NJM|1|0|A|1846
1NJM|1|0|G|1847
1NJM|1|0|U|1848
*
1NJM|1|0|A|1869
1NJM|1|0|U|1870
1NJM|1|0|G|1871
1NJM|1|0|A|1872
1NJM|1|0|A|1873
1NJM|1|0|G|1874

Current chains

Chain 0

23S ribosomal RNA

Nearby chains