IL_9E6Q_072

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

(PSU)GA(A2M)CC*GCGA(A2M)G

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9E6Q|1|1|PSU|1987
9E6Q|1|1|G|1988
9E6Q|1|1|A|1989
9E6Q|1|1|A2M|1990
9E6Q|1|1|C|1991
9E6Q|1|1|C|1992
*
9E6Q|1|1|G|2007
9E6Q|1|1|C|2008
9E6Q|1|1|G|2009
9E6Q|1|1|A|2010
9E6Q|1|1|A2M|2011
9E6Q|1|1|G|2012

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2