IL_1NJO_018

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1NJO|1|0|G|814, 1NJO|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_018 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.3543

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|G|687
1NJO|1|0|A|688
1NJO|1|0|A|689
1NJO|1|0|A|690
1NJO|1|0|C|691
*
1NJO|1|0|G|812
1NJO|1|0|A|813
1NJO|1|0|G|814
1NJO|1|0|A|815
1NJO|1|0|U|816
1NJO|1|0|A|817
1NJO|1|0|G|818
1NJO|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains