IL_1NJO_036

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

1NJO|1|0|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_036 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.3086

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

1NJO|1|0|U|1005
1NJO|1|0|C|1006
1NJO|1|0|A|1007
*
1NJO|1|0|U|1170
1NJO|1|0|A|1171

Current chains

Chain 0

23S ribosomal RNA

Nearby chains