IL_1NJO_135

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCAAGU*AUGAAG

Length

12 nucleotides

Bulged bases

1NJO|1|0|G|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_135 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3888

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

1NJO|1|0|U|1843
1NJO|1|0|C|1844
1NJO|1|0|A|1845
1NJO|1|0|A|1846
1NJO|1|0|G|1847
1NJO|1|0|U|1848
*
1NJO|1|0|A|1869
1NJO|1|0|U|1870
1NJO|1|0|G|1871
1NJO|1|0|A|1872
1NJO|1|0|A|1873
1NJO|1|0|G|1874

Current chains

Chain 0

23S ribosomal RNA

Nearby chains