IL_1NJP_011

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

1NJP|1|0|C|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_011 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5831

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74852.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1NJP|1|0|C|303
1NJP|1|0|A|304
1NJP|1|0|A|305
1NJP|1|0|G|306
*
1NJP|1|0|C|354
1NJP|1|0|G|355
1NJP|1|0|A|356
1NJP|1|0|A|357
1NJP|1|0|C|358
1NJP|1|0|G|359

Current chains

Chain 0

23S ribosomal RNA

Nearby chains