IL_1NJP_056

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_056 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.1438

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1NJP|1|0|U|1370
1NJP|1|0|G|1371
1NJP|1|0|A|1372
1NJP|1|0|G|1373
1NJP|1|0|G|1374
*
1NJP|1|0|C|1383
1NJP|1|0|G|1384
1NJP|1|0|C|1385
1NJP|1|0|A|1386
1NJP|1|0|G|1387

Current chains

Chain 0

23S ribosomal RNA

Nearby chains