IL_1NJP_058

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

1NJP|1|0|U|1600, 1NJP|1|0|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_058 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4671

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1NJP|1|0|U|1426
1NJP|1|0|G|1427
1NJP|1|0|G|1428
1NJP|1|0|A|1429
1NJP|1|0|G|1430
*
1NJP|1|0|C|1598
1NJP|1|0|G|1599
1NJP|1|0|U|1600
1NJP|1|0|U|1601
1NJP|1|0|G|1602
1NJP|1|0|A|1603
1NJP|1|0|A|1604
1NJP|1|0|A|1605

Current chains

Chain 0

23S ribosomal RNA

Nearby chains