IL_1NKW_007

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUGA*UCUCAGUAC

Length

17 nucleotides

Bulged bases

1NKW|1|0|G|182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_007 not in the Motif Atlas

Geometric match to IL_3DIL_003

Geometric discrepancy: 0.326

The information below is about IL_3DIL_003

Detailed Annotation

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34470.3

Basepair signature

cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

Number of instances in this motif group

2

Unit IDs

1NKW|1|0|G|165
1NKW|1|0|G|166
1NKW|1|0|A|167
1NKW|1|0|A|168
1NKW|1|0|C|169
1NKW|1|0|U|170
1NKW|1|0|G|171
1NKW|1|0|A|172
*
1NKW|1|0|U|177
1NKW|1|0|C|178
1NKW|1|0|U|179
1NKW|1|0|C|180
1NKW|1|0|A|181
1NKW|1|0|G|182
1NKW|1|0|U|183
1NKW|1|0|A|184
1NKW|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain Y

50S ribosomal protein L31